AmiGO visualization interface for R

R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape. Also uses RCytoscape to interactively display AmiGO trees in Cytoscape.

Markus Schroeder, Daniel Gusenleitner, John Quackenbush, Aedin Culhane, Benjamin Haibe-Kains

URL: https://www.bioconductor.org/packages//2.10/bioc/html/RamiGO.html

Publication: http://bioinformatics.oxfordjournals.org/content/29/5/666.long