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Publications citing use of PMGC (formerly UHNMAC) microarrays
Antignano F, Burrows K, Hughes MR, Han JM, Kron KJ, Penrod NM, Oudhoff MJ, Wang SK, Min PH, Gold MJ, Chenery AL, Braam MJ, Fung TC, Rossi FM, McNagny KM, Arrowsmith CH, Lupien M, Levings MK and Zaph C. Methyltransferase G9A regulates T cell differentiation during murine intestinal inflammation. Journal of Clinical Investigation. 2014 May 1;124(5):1945-55.

Azad AK, Qiu X, Boyd K, Kuang Q, Emami M, Perera N, Palepu P, Patel D, Chen Z, Cheng D, Feld R, Leighl NB, Shepherd FA, Tsao MS, Xu W, Liu G and Cuffe S. A genetic sequence variant (GSV) at susceptibility loci of 5p15.33 (TERT-CLPTM1L) is associated with survival outcome in locally advanced and metastatic non-small-cell lung cancer (NSCLC). Lung Cancer. 2014 Jun;84(3):289-94.

Buczkowicz P, Hoeman C, Rakopoulos P, Pajovic S, Letourneau L, Dzamba M, Morrison A, Lewis P, Bouffet E, Bartels U, Zuccaro J, Agnihotri S, Ryall S, Barszczyk M, Chornenkyy Y, Bourgey M, Bourque G, Montpetit A, Cordero F, Castelo-Branco P, Mangerel J, Tabori U, Ho KC, Huang A, Taylor KR, Mackay A, Bendel AE, Nazarian J, Fangusaro JR, Karajannis MA, Zagzag D, Foreman NK, Donson A, Hegert JV, Smith A, Chan J, Lafay-Cousin L, Dunn S, Hukin J, Dunham C, Scheinemann K, Michaud J, Zelcer S, Ramsay D, Cain J, Brennan C, Souweidane MM, Jones C, Allis CD, Brudno M, Becher O and Hawkins C. Genomic analysis of diffuse intrinsic pontine gliomas identifies three molecular subgroups and recurrent activating ACVR1 mutations. Nature Genetics. 2014 May;46(5):451-6.

Chow A, Wong A, Francia G, Man S, Kerbel RS and Emmenegger U. Preclinical analysis of resistance and cross-resistance to low-dose metronomic chemotherapy. Investigational New Drugs. 2014 Feb;32(1):47-59.

De Souza AP, Planello AC, Marques MR, De Carvalho DD and Line SR. High-throughput DNA analysis shows the importance of methylation in the control of immune inflammatory gene transcription in chronic periodontitis. Clinical Epigenetics. 2014 6(1):15.

Deng T, Liu JC, Chung PE, Uehling D, Aman A, Joseph B, Ketela T, Jiang Z, Schachter NF, Rottapel R, Egan SE, Al-Awar R, Moffat J and Zacksenhaus E. shRNA kinome screen identifies TBK1 as a therapeutic target for HER2+ breast cancer. Cancer Research. 2014 Apr 1;74(7):2119-30.

Der SD, Sykes J, Pintilie M, Zhu CQ, Strumpf D, Liu N, Jurisica I, Shepherd FA and Tsao MS. Validation of a histology-independent prognostic gene signature for early-stage, non-small-cell lung cancer including stage IA patients. Journal of Thoracic Oncology. 2014 Jan;9(1):59-64.

Dragon S, Hirst SJ, Lee TH and Gounni AS. IL-17A mediates a selective gene expression profile in asthmatic human airway smooth muscle cells. American Journal of Respiratory Cell and Molecular Biology. 2014 Jun;50(6):1053-63.

Eng SW, Duong TT, Rosenberg AM, Morris Q, Yeung RS, on behalf of the RO and Consortia BR. The biological basis for clinical heterogeneity in childhood arthritis. Arthritis Rheumatol. 2014 Sep 8;.

Ferreira R, Lively S and Schlichter LC. IL-4 type 1 receptor signaling up-regulates KCNN4 expression, and increases the KCa3.1 current and its contribution to migration of alternative-activated microglia. Frontiers in Cellular Neuroscience. 2014 8:183.

Hackmann A, Wu H, Schneider UM, Meyer K, Jung K and Krebber H. Quality control of spliced mRNAs requires the shuttling SR proteins Gbp2 and Hrb1. Nat Commun. 2014 5:3123.

Jahani R, Fielding KA, Chen J, Villa CR, Castelli LM, Ward WE and Comelli EM. Low vitamin D status throughout life results in an inflammatory prone status but does not alter bone mineral or strength in healthy 3-month-old CD-1 male mice. Mol Nutr Food Res. 2014 Jul;58(7):1491-501.

Jalali S, Singh S, Agnihotri S, Wataya T, Salehi F, Burrell K, Navab R, Croul S, Aldape K and Zadeh G. A role for matrix remodeling proteins in invasive and malignant meningiomas. Neuropathology and Applied Neurobiology. 2014 Jul 3;.

Licursi V, Salvi C, De Cesare V, Rinaldi T, Mattei B, Fabbri C, Serino G, Bramasole L, Zimbler JZ, Pick E, Barnes BM, Bard M and Negri R. The COP9 signalosome is involved in the regulation of lipid metabolism and of transition metals uptake in Saccharomyces cerevisiae. FEBS J. 2014 Jan;281(1):175-90.

Molyneux SD, Waterhouse PD, Shelton D, Shao YW, Watling CM, Tang QL, Harris IS, Dickson BC, Tharmapalan P, Sandve GK, Zhang X, Bailey SD, Berman H, Wunder JS, Iszvak Z, Lupien M, Mak TW and Khokha R. Human somatic cell mutagenesis creates genetically tractable sarcomas. Nature Genetics. 2014 Sep;46(9):964-72.

Newman AM, Bratman SV, To J, Wynne JF, Eclov NC, Modlin LA, Liu CL, Neal JW, Wakelee HA, Merritt RE, Shrager JB, Loo BW, Jr., Alizadeh AA and Diehn M. An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage. Nature Medicine. 2014 May;20(5):548-54.

Orlic-Milacic M, Kaufman L, Mikhailov A, Cheung AY, Mahmood H, Ellis J, Gianakopoulos PJ, Minassian BA and Vincent JB. Over-expression of either MECP2_e1 or MECP2_e2 in neuronally differentiated cells results in different patterns of gene expression. PloS One. 2014 9(4):e91742.

Penfornis P, Cai DZ, Harris MR, Walker R, Licini D, Fernandes JD, Orr G, Koganti T, Hicks C, Induru S, Meyer MS, Khokha R, Barr J and Pochampally RR. High CD49f expression is associated with osteosarcoma tumor progression: a study using patient-derived primary cell cultures. Cancer Med. 2014 Aug;3(4):796-811.

Planello AC, Ji J, Sharma V, Singhania R, Mbabaali F, Muller F, Alfaro JA, Bock C, De Carvalho DD and Batada NN. Aberrant DNA methylation reprogramming during iPS cell generation is dependent on the choice of reprogramming factors. Cell Regeneration. 2014 3(4).

Rajpathak SN and Deobagkar DD. Evidence for epigenetic alterations in Turner syndrome opens up feasibility of new pharmaceutical interventions. Current Pharmaceutical Design. 2014 20(11):1778-85.

Sharma P, Garg G, Kumar A, Mohammad F, Kumar SR, Tanwar VS, Sati S, Sharma A, Karthikeyan G, Brahmachari V and Sengupta S. Genome wide DNA methylation profiling for epigenetic alteration in coronary artery disease patients. Gene. 2014 May 10;541(1):31-40.

Sintsova A, Sarantis H, Islam EA, Sun CX, Amin M, Chan CH, Stanners CP, Glogauer M and Gray-Owen SD. Global Analysis of Neutrophil Responses to Neisseria gonorrhoeae Reveals a Self-Propagating Inflammatory Program. PLoS Pathogens. 2014 Sep;10(9):e1004341.

Tam S, de Borja R, Tsao MS and McPherson JD. Robust global microRNA expression profiling using next-generation sequencing technologies. Laboratory Investigation. 2014 Mar;94(3):350-8.

Theocharides AP, Dobson SM, Laurenti E, Notta F, Voisin V, Cheng PY, Yuan JS, Guidos CJ, Minden MD, Mullighan CG, Torlakovic E and Dick JE. Dominant-negative Ikaros cooperates with BCR-ABL1 to induce human acute myeloid leukemia in xenografts. Leukemia. 2014 May 5;.

Thu KL, Radulovich N, Becker-Santos DD, Pikor LA, Pusic A, Lockwood WW, Lam WL and Tsao MS. SOX15 is a candidate tumor suppressor in pancreatic cancer with a potential role in Wnt/beta-catenin signaling. Oncogene. 2014 Jan 16;33(3):279-88.

Watson JD, Prokopec SD, Smith AB, Okey AB, Pohjanvirta R and Boutros PC. TCDD dysregulation of 13 AHR-target genes in rat liver. Toxicology and Applied Pharmacology. 2014 Feb 1;274(3):445-54.

Yan J, De Melo J, Cutz JC, Aziz T and Tang D. Aldehyde dehydrogenase 3A1 associates with prostate tumorigenesis. British Journal of Cancer. 2014 May 13;110(10):2593-603.

Yang X, Han H, De Carvalho DD, Lay FD, Liang G and Jones PA. Gene Body Methylation can Directly Alter Gene Expression adn is a Therapeutic Target in Cancer. Cancer Cell. 2014 Oct 13;26(4):449-51.

Zhang L, Nosak C, Sollazzo P, Odisho T and Volchuk A. IRE1 inhibition perturbs the unfolded protein response in a pancreatic beta-cell line expressing mutant proinsulin, but does not sensitize the cells to apoptosis. BMC Cell Biology. 2014 15:29.

Zhao T, Sun Q, del Rincon SV, Lovato A, Marques M and Witcher M. Gallotannin imposes S phase arrest in breast cancer cells and suppresses the growth of triple-negative tumors in vivo. PloS One. 2014 9(3):e92853.

Aref D, Moffatt CJ, Agnihotri S, Ramaswamy V, Dubuc AM, Northcott PA, Taylor MD, Perry A, Olson JM, Eberhart CG and Croul SE. Canonical TGF-beta pathway activity is a predictor of SHH-driven medulloblastoma survival and delineates putative precursors in cerebellar development. Brain Pathology. 2013 Mar;23(2):178-91.

Au SH, Fobel R, Desai SP, Voldman J and Wheeler AR. Cellular bias on the microscale: probing the effects of digital microfluidic actuation on mammalian cell health, fitness and phenotype. Integrative Biology: Quantitative Biosciences from Nano to Macro. 2013 Aug;5(8):1014-25.

Chan C, Virtanen C, Winegarden NA, Colgan TJ, Brown TJ and Greenblatt EM. Discovery of biomarkers of endometrial receptivity through a minimally invasive approach: a validation study with implications for assisted reproduction. Fertility and Sterility. 2013 Sep;100(3):810-7.

Cheng AS, Li MS, Kang W, Cheng VY, Chou JL, Lau SS, Go MY, Lee CC, Ling TK, Ng EK, Yu J, Huang TH, To KF, Chan MW, Sung JJ and Chan FK. Helicobacter pylori causes epigenetic dysregulation of FOXD3 to promote gastric carcinogenesis. Gastroenterology. 2013 Jan;144(1):122-133 e9.

Demissie ZA, Erland LA, Rheault MR and Mahmoud SS. The biosynthetic origin of irregular monoterpenes in Lavandula: isolation and biochemical characterization of a novel cis-prenyl diphosphate synthase gene, lavandulyl diphosphate synthase. Journal of Biological Chemistry. 2013 Mar 1;288(9):6333-41.

DeVeale B, Brokhman I, Mohseni P, Babak T, Yoon C, Lin A, Onishi K, Tomilin A, Pevny L, Zandstra PW, Nagy A and van der Kooy D. Oct4 is required ~E7.5 for proliferation in the primitive streak. PLoS Genet. 2013 Nov;9(11):e1003957.

Dhanasiri AK, Fernandes JM and Kiron V. Liver transcriptome changes in zebrafish during acclimation to transport-associated stress. PloS One. 2013 8(6):e65028.

Gandhi R, Santone D, Takahashi M, Dessouki O and Mahomed NN. Inflammatory predictors of ongoing pain 2 years following knee replacement surgery. Knee. 2013 Oct;20(5):316-8.

Gilmour AM, Abdulkhalek S, Cheng TS, Alghamdi F, Jayanth P, O'Shea LK, Geen O, Arvizu LA and Szewczuk MR. A novel epidermal growth factor receptor-signaling platform and its targeted translation in pancreatic cancer. Cellular Signalling. 2013 Dec;25(12):2587-603.

Harcus D, Dignard D, Lepine G, Askew C, Raymond M, Whiteway M and Wu C. Comparative xylose metabolism among the Ascomycetes C. albicans, S. stipitis and S. cerevisiae. PloS One. 2013 8(11):e80733.

Izrailit J, Berman HK, Datti A, Wrana JL and Reedijk M. High throughput kinase inhibitor screens reveal TRB3 and MAPK-ERK/TGFbeta pathways as fundamental Notch regulators in breast cancer. Proceedings of the National Academy of Sciences of the United States of America. 2013 Jan 29;110(5):1714-9.

Kim H, Zamel R, Bai XH and Liu M. PKC activation induces inflammatory response and cell death in human bronchial epithelial cells. PloS One. 2013 8(5):e64182.

Liu CG, Lin YH and Bai FW. Global gene expression analysis of Saccharomyces cerevisiae grown under redox potential-controlled very-high-gravity conditions. Biotechnol J. 2013 Nov;8(11):1332-40.

Lovejoy DA and Barsyte-Lovejoy D. Systems approaches to genomic and epigenetic inter-regulation of peptide hormones in stress and reproduction. Progress in Biophysics and Molecular Biology. 2013 Dec;113(3):375-86.

Nfon CK, Leung A, Smith G, Embury-Hyatt C, Kobinger G and Weingartl HM. Immunopathogenesis of severe acute respiratory disease in Zaire ebolavirus-infected pigs. PloS One. 2013 8(4):e61904.

Ogawa S, Surapisitchat J, Virtanen C, Ogawa M, Niapour M, Sugamori KS, Wang S, Tamblyn L, Guillemette C, Hoffmann E, Zhao B, Strom S, Laposa RR, Tyndale RF, Grant DM and Keller G. Three-dimensional culture and cAMP signaling promote the maturation of human pluripotent stem cell-derived hepatocytes. Development. 2013 Aug;140(15):3285-96.

Perron N, Tremblay E, Ferretti E, Babakissa C, Seidman EG, Levy E, Menard D and Beaulieu JF. Deleterious effects of indomethacin in the mid-gestation human intestine. Genomics. 2013 Mar;101(3):171-7.

Prokopec SD, Watson JD, Waggott DM, Smith AB, Wu AH, Okey AB, Pohjanvirta R and Boutros PC. Systematic evaluation of medium-throughput mRNA abundance platforms. RNA. 2013 Jan;19(1):51-62.

Reginensi A, Scott RP, Gregorieff A, Bagherie-Lachidan M, Chung C, Lim DS, Pawson T, Wrana J and McNeill H. Yap- and Cdc42-dependent nephrogenesis and morphogenesis during mouse kidney development. PLoS Genet. 2013 Mar;9(3):e1003380.

Samuel N, Sayad A, Wilson G, Lemire M, Brown KR, Muthuswamy L, Hudson TJ and Moffat J. Integrated genomic, transcriptomic, and RNA-interference analysis of genes in somatic copy number gains in pancreatic ductal adenocarcinoma. Pancreas. 2013 Aug;42(6):1016-26.

Thomas A, Mahantshetty U, Kannan S, Deodhar K, Shrivastava SK, Kumar-Sinha C and Mulherkar R. Expression profiling of cervical cancers in Indian women at different stages to identify gene signatures during progression of the disease. Cancer Med. 2013 Dec;2(6):836-48.

Vallieres E, Saint-Jean M and Rallu F. Comparison of three different methods for detection of Shiga toxin-producing Escherichia coli in a tertiary pediatric care center. Journal of Clinical Microbiology. 2013 Feb;51(2):481-6.

Virani S, Edwards AK, Thomas R, Childs T and Tayade C. Blocking of stromal cell-derived factor-1 reduces neoangiogenesis in human endometriosis lesions in a mouse model. American Journal of Reproductive Immunology. 2013 Nov;70(5):386-97.

Wasylishen AR, Chan-Seng-Yue M, Bros C, Dingar D, Tu WB, Kalkat M, Chan PK, Mullen PJ, Huang L, Meyer N, Raught B, Boutros PC and Penn LZ. MYC phosphorylation at novel regulatory regions suppresses transforming activity. Cancer Research. 2013 Nov 1;73(21):6504-15.

Zarkoob H, Taube JH, Singh SK, Mani SA and Kohandel M. Investigating the link between molecular subtypes of glioblastoma, epithelial-mesenchymal transition, and CD133 cell surface protein. PloS One. 2013 8(5):e64169.

Zhukova N, Ramaswamy V, Remke M, Pfaff E, Shih DJ, Martin DC, Castelo-Branco P, Baskin B, Ray PN, Bouffet E, von Bueren AO, Jones DT, Northcott PA, Kool M, Sturm D, Pugh TJ, Pomeroy SL, Cho YJ, Pietsch T, Gessi M, Rutkowski S, Bognar L, Klekner A, Cho BK, Kim SK, Wang KC, Eberhart CG, Fevre-Montange M, Fouladi M, French PJ, Kros M, Grajkowska WA, Gupta N, Weiss WA, Hauser P, Jabado N, Jouvet A, Jung S, Kumabe T, Lach B, Leonard JR, Rubin JB, Liau LM, Massimi L, Pollack IF, Shin Ra Y, Van Meir EG, Zitterbart K, Schuller U, Hill RM, Lindsey JC, Schwalbe EC, Bailey S, Ellison DW, Hawkins C, Malkin D, Clifford SC, Korshunov A, Pfister S, Taylor MD and Tabori U. Subgroup-specific prognostic implications of TP53 mutation in medulloblastoma. Journal of Clinical Oncology. 2013 Aug 10;31(23):2927-35.

Alajez NM, Shi W, Wong D, Lenarduzzi M, Waldron J, Weinreb I and Liu FF. Lin28b promotes head and neck cancer progression via modulation of the insulin-like growth factor survival pathway. Oncotarget. 2012 Dec;3(12):1641-52.

Aleksic M and Feng ZP. Identification of the role of C/EBP in neurite regeneration following microarray analysis of a L. stagnalis CNS injury model. BMC Neuroscience. 2012 13:2.

Arneson N, Moreno J, Iakovlev V, Ghazani A, Warren K, McCready D, Jurisica I and Done SJ. Comparison of whole genome amplification methods for analysis of DNA extracted from microdissected early breast lesions in formalin-fixed paraffin-embedded tissue. ISRN Oncology. 2012 2012:710692.

Badea I, Virtanen C, Verrall RE, Rosenberg A and Foldvari M. Effect of topical interferon-gamma gene therapy using gemini nanoparticles on pathophysiological markers of cutaneous scleroderma in Tsk/+ mice. Gene Therapy. 2012 Oct;19(10):978-87.

Basford CL, Prentice KJ, Hardy AB, Sarangi F, Micallef SJ, Li X, Guo Q, Elefanty AG, Stanley EG, Keller G, Allister EM, Nostro MC and Wheeler MB. The functional and molecular characterisation of human embryonic stem cell-derived insulin-positive cells compared with adult pancreatic beta cells. Diabetologia. 2012 Feb;55(2):358-71.

Beaulieu JF and Menard D. Isolation, characterization, and culture of normal human intestinal crypt and villus cells. Methods in Molecular Biology. 2012 806:157-73.

Biankin AV, Waddell N, Kassahn KS, Gingras MC, Muthuswamy LB, Johns AL, Miller DK, Wilson PJ, Patch AM, Wu J, Chang DK, Cowley MJ, Gardiner BB, Song S, Harliwong I, Idrisoglu S, Nourse C, Nourbakhsh E, Manning S, Wani S, Gongora M, Pajic M, Scarlett CJ, Gill AJ, Pinho AV, Rooman I, Anderson M, Holmes O, Leonard C, Taylor D, Wood S, Xu Q, Nones K, Fink JL, Christ A, Bruxner T, Cloonan N, Kolle G, Newell F, Pinese M, Mead RS, Humphris JL, Kaplan W, Jones MD, Colvin EK, Nagrial AM, Humphrey ES, Chou A, Chin VT, Chantrill LA, Mawson A, Samra JS, Kench JG, Lovell JA, Daly RJ, Merrett ND, Toon C, Epari K, Nguyen NQ, Barbour A, Zeps N, Australian Pancreatic Cancer Genome I, Kakkar N, Zhao F, Wu YQ, Wang M, Muzny DM, Fisher WE, Brunicardi FC, Hodges SE, Reid JG, Drummond J, Chang K, Han Y, Lewis LR, Dinh H, Buhay CJ, Beck T, Timms L, Sam M, Begley K, Brown A, Pai D, Panchal A, Buchner N, De Borja R, Denroche RE, Yung CK, Serra S, Onetto N, Mukhopadhyay D, Tsao MS, Shaw PA, Petersen GM, Gallinger S, Hruban RH, Maitra A, Iacobuzio-Donahue CA, Schulick RD, Wolfgang CL, Morgan RA, Lawlor RT, Capelli P, Corbo V, Scardoni M, Tortora G, Tempero MA, Mann KM, Jenkins NA, Perez-Mancera PA, Adams DJ, Largaespada DA, Wessels LF, Rust AG, Stein LD, Tuveson DA, Copeland NG, Musgrove EA, Scarpa A, Eshleman JR, Hudson TJ, Sutherland RL, Wheeler DA, Pearson JV, McPherson JD, Gibbs RA and Grimmond SM. Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes. Nature. 2012 Nov 15;491(7424):399-405.

Brustle A, Brenner D, Knobbe CB, Lang PA, Virtanen C, Hershenfield BM, Reardon C, Lacher SM, Ruland J, Ohashi PS and Mak TW. The NF-kappaB regulator MALT1 determines the encephalitogenic potential of Th17 cells. Journal of Clinical Investigation. 2012 Dec 3;122(12):4698-709.

Cabello JV, Arce AL and Chan RL. The homologous HD-Zip I transcription factors HaHB1 and AtHB13 confer cold tolerance via the induction of pathogenesis-related and glucanase proteins. Plant Journal. 2012 Jan;69(1):141-53.

Carrillo E, Ben-Ari G, Wildenhain J, Tyers M, Grammentz D and Lee TA. Characterizing the roles of Met31 and Met32 in coordinating Met4-activated transcription in the absence of Met30. Molecular Biology of the Cell. 2012 May;23(10):1928-42.

Chan O, Burke JD, Gao DF and Fish EN. The chemokine CCL5 regulates glucose uptake and AMP kinase signaling in activated T cells to facilitate chemotaxis. Journal of Biological Chemistry. 2012 Aug 24;287(35):29406-16.

Chingcuanco F, Yu Y, Kus JV, Que L, Lackraj T, Levesque CM and Barnett Foster D. Identification of a novel adhesin involved in acid-induced adhesion of enterohaemorrhagic Escherichia coli O157 : H7. Microbiology. 2012 Sep;158(Pt 9):2399-407.

Colyer HA, Dellett M and Mills KI. Detecting DNA methylation using the methylated CpG island amplification and microarray technique. Methods in Molecular Biology. 2012 863:329-39.

Contreras A, Garcia V, Salinas F, Urzua U, Ganga MA and Martinez C. Identification of genes related to nitrogen uptake in wine strains of Saccharomyces cerevisiae. World Journal of Microbiology & Biotechnology. 2012 Mar;28(3):1107-13.

Cook DJ, Teves L, Tymianski M. Treatment of stroke with a PSD-95 inhibitor in the gyrencephalic primate brain. Nature. 2012, 483:213.

Demissie ZA, Cella MA, Sarker LS, Thompson TJ, Rheault MR and Mahmoud SS. Cloning, functional characterization and genomic organization of 1,8-cineole synthases from Lavandula. Plant Molecular Biology. 2012 Jul;79(4-5):393-411.

Dhillon SS, Gingerich S, Virtanen C, et al. Gene array analysis of embryonic - versus adult-derived hypothalamic NPY-expressing cell lines. Mol Cell Endocrinol. 2012 358(1):116-26

Forgione N and Tropepe V. Toll-like signaling and the cytokine IL-6 regulate histone deacetylase dependent neuronal survival. PloS One. 2012 7(7):e41033.

Forshew T, Murtaza M, Parkinson C, Gale D, Tsui DW, Kaper F, Dawson SJ, Piskorz AM, Jimenez-Linan M, Bentley D, Hadfield J, May AP, Caldas C, Brenton JD and Rosenfeld N. Noninvasive identification and monitoring of cancer mutations by targeted deep sequencing of plasma DNA. Science Translational Medicine. 2012 May 30;4(136):136ra68.

Franks SE, Campbell CI, Barnett EF, Siwicky MD, Livingstone J, Cory S and Moorehead RA. Transgenic IGF-IR overexpression induces mammary tumors with basal-like characteristics, whereas IGF-IR-independent mammary tumors express a claudin-low gene signature. Oncogene. 2012 Jul 5;31(27):3298-309.

Fraser M, Zhao H, Luoto KR, Lundin C, Coackley C, Chan N, Joshua AM, Bismar TA, Evans A, Helleday T and Bristow RG. PTEN deletion in prostate cancer cells does not associate with loss of RAD51 function: implications for radiotherapy and chemotherapy. Clinical Cancer Research. 2012 Feb 15;18(4):1015-27.

Gandhi R, Takahashi M, Rizek R, Dessouki O and Mahomed NN. Obesity-related adipokines and shoulder osteoarthritis. Journal of Rheumatology. 2012 Oct;39(10):2046-8.

Gilpin S, Lung KC, Sato M, et al. Altered progenitor cell and cytokine profiles in bronchiolitis obliterans syndrome. J Heart Lung Transplant. 2012 Feb;31(2):222-8

Kaminsky Z, Tochigi M, Jia P, Pal M, Mill J, Kwan A, Ioshikhes I, Vincent JB, Kennedy JL, Strauss J, Pai S, Wang SC and Petronis A. A multi-tissue analysis identifies HLA complex group 9 gene methylation differences in bipolar disorder. Molecular Psychiatry. 2012 Jul;17(7):728-40.

Katzir Y, Stolovicki E, Stern S and Braun E. Cellular plasticity enables adaptation to unforeseen cell-cycle rewiring challenges. PloS One. 2012 7(9):e45184.

Ko MA, Zehong G, Virtanen C, Guindi M, Waddell TK, Keshavjee S and Darling GE. MicroRNA expression profiling of esophageal cancer before and after induction chemoradiotherapy. Annals of Thoracic Surgery. 2012 Oct;94(4):1094-102; discussion 1102-3.

Konradi C, Sillivan SE and Clay HB. Mitochondria, oligodendrocytes and inflammation in bipolar disorder: evidence from transcriptome studies points to intriguing parallels with multiple sclerosis. Neurobiology of Disease. 2012 Jan;45(1):37-47.

Lintas C, Sacco R and Persico AM. Genome-wide expression studies in autism spectrum disorder, Rett syndrome, and Down syndrome. Neurobiology of Disease. 2012 Jan;45(1):57-68.

Maeda A, Leung MK, Conroy L, Chen Y, Bu J, Lindsay PE, Mintzberg S, Virtanen C, Tsao J, Winegarden NA, Wang Y, Morikawa L, Vitkin IA, Jaffray DA, Hill RP and DaCosta RS. In vivo optical imaging of tumor and microvascular response to ionizing radiation. PloS One. 2012 7(8):e42133.

McDermott SP, Eppert K, Notta F, Isaac M, Datti A, Al-Awar R, Wrana J, Minden MD and Dick JE. A small molecule screening strategy with validation on human leukemia stem cells uncovers the therapeutic efficacy of kinetin riboside. Blood. 2012 Feb 2;119(5):1200-7.

McGilvray I, Feld JJ, Chen L, Pattullo V, Guindi M, Fischer S, Borozan I, Xie G, Selzner N, Heathcote EJ and Siminovitch K. Hepatic cell-type specific gene expression better predicts HCV treatment outcome than IL28B genotype. Gastroenterology. 2012 May;142(5):1122-1131 e1.

Ménard D, Tremblay E, Ferretti E, et al. Anti-inflammatory effects of epidermal growth factor on the immature human intestine. Genomics. 2012 Feb 27;44(4):268-80. Epub 2012 Jan 3.

Mura M, Anraku M, Yun Z, McRae K, Liu M, Waddell TK, Singer LG, Granton JT, Keshavjee S and de Perrot M. Gene expression profiling in the lungs of patients with pulmonary hypertension associated with pulmonary fibrosis. Chest. 2012 Mar;141(3):661-73.

Northcott PA, Shih DJ, Remke M, Cho YJ, Kool M, Hawkins C, Eberhart CG, Dubuc A, Guettouche T, Cardentey Y, Bouffet E, Pomeroy SL, Marra M, Malkin D, Rutka JT, Korshunov A, Pfister S and Taylor MD. Rapid, reliable, and reproducible molecular sub-grouping of clinical medulloblastoma samples. Acta Neuropathologica. 2012 Apr;123(4):615-26.

O'Brien CA, Kreso A, Ryan P, Hermans KG, Gibson L, Wang Y, Tsatsanis A, Gallinger S and Dick JE. ID1 and ID3 regulate the self-renewal capacity of human colon cancer-initiating cells through p21. Cancer Cell. 2012 Jun 12;21(6):777-92.

Orozco H, Matallana E and Aranda A. Oxidative stress tolerance, adenylate cyclase, and autophagy are key players in the chronological life span of Saccharomyces cerevisiae during winemaking. Applied and Environmental Microbiology. 2012 Apr;78(8):2748-57.

Oyaizu T, Fung SY, Shiozaki A, Guan Z, Zhang Q, dos Santos CC, Han B, Mura M, Keshavjee S and Liu M. Src tyrosine kinase inhibition prevents pulmonary ischemia-reperfusion-induced acute lung injury. Intensive Care Medicine. 2012 May;38(5):894-905.

Sacha JB, Kim IJ, Chen L, Ullah JH, Goodwin DA, Simmons HA, Schenkman DI, von Pelchrzim F, Gifford RJ, Nimityongskul FA, Newman LP, Wildeboer S, Lappin PB, Hammond D, Castrovinci P, Piaskowski SM, Reed JS, Beheler KA, Tharmanathan T, Zhang N, Muscat-King S, Rieger M, Fernandes C, Rumpel K, Gardner JP, 2nd, Gebhard DH, Janies J, Shoieb A, Pierce BG, Trajkovic D, Rakasz E, Rong S, McCluskie M, Christy C, Merson JR, Jones RB, Nixon DF, Ostrowski MA, Loudon PT, Pruimboom-Brees IM and Sheppard NC. Vaccination with cancer- and HIV infection-associated endogenous retrotransposable elements is safe and immunogenic. Journal of Immunology. 2012 Aug 1;189(3):1467-79.

San-Marina S, Han Y, Liu J and Minden MD. Suspected leukemia oncoproteins CREB1 and LYL1 regulate Op18/STMN1 expression. Biochimica et Biophysica Acta. 2012 Nov-Dec;1819(11-12):1164-72.

Sasaki M, Knobbe CB, Munger JC, Lind EF, Brenner D, Brustle A, Harris IS, Holmes R, Wakeham A, Haight J, You-Ten A, Li WY, Schalm S, Su SM, Virtanen C, Reifenberger G, Ohashi PS, Barber DL, Figueroa ME, Melnick A, Zuniga-Pflucker JC and Mak TW. IDH1(R132H) mutation increases murine haematopoietic progenitors and alters epigenetics. Nature. 2012 Aug 30;488(7413):656-9.

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